#!/bin/bash

p=$1

rm -f combine.log > /dev/null
rm -f combine.err > /dev/null
rm -f combine.out > /dev/null
if [ "$p" = "1" ] 
then
echo '#!/bin/bash' > combine.pbs
echo 'if [[ "$PBS_O_WORKDIR" != "" ]]; then' >> combine.pbs
echo '    cd $PBS_O_WORKDIR' >> combine.pbs
echo 'fi' >> combine.pbs
echo "../bin/combine_events;touch combine.out" >> combine.pbs
chmod u+x combine.pbs
echo "$qsub -q medium $j"
qsub -q medium -e combine.err -o combine.log -V combine.pbs >> ../running_jobs
while [ ! -e combine.out ]
do
  sleep 1
done  
rm -f combine.pbs
sleep 5
######################################################
#ji+
#this two files are not ready yet ... do the cat later
while [ ! -e combine.log ]
do
  echo "[WARNING] combine.log not available yet, job not completely finished ... waiting"
  sleep 10
done
cat combine.log

while [ ! -e combine.err ]
do
  echo "[WARNING] combine.err not available yet, job not completely finished"
  sleep 10
done
cat combine.err
#ji

else
../bin/combine_events 
fi

# Remove huge scratch file
rm -f scratch